Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M09
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    29   0.63 
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    27   2.6  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    27   4.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   5.9  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   7.8  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 787 GGLXFLYNXSSPIGSSWVCYVTGQKSKTXVGPQ 689
           G L +L+   +PI S   C ++G  + T +GP+
Sbjct: 183 GSLEYLFEQKNPIPSYLFCILSGDLASTNIGPR 215


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 492 RCLHGYTIDHSKCKQYFKFHNV-SILWGG 575
           R ++G +++   CK++ KFH++   L GG
Sbjct: 205 RVIYGGSVNGGNCKEFLKFHDIDGFLVGG 233


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -2

Query: 479 PGTILVITISEKLHVNSDGLRKGSLSYARKTLTVELFLIT-KASVNSSELKSPNAAIIPS 303
           PG ++V++ +++   +S  ++KG++   ++ L V+  L T   ++ + EL +     +  
Sbjct: 92  PGDLVVVSYNKEYSTDSFAIQKGTIKPGQRVLIVDDILATGGTALAADELVTRLGGELVG 151

Query: 302 EYFPNELLVISLTKELV 252
             F  EL  +   K L+
Sbjct: 152 HLFLLELTFLQGRKRLM 168


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 328  DFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEF 435
            DF   +L  AF++   +    FLAY  + FL+   F
Sbjct: 1141 DFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLGGF 1176


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 313 IAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCN 444
           + +F  F+S      F  +N+   N+F   +  P LR S   CN
Sbjct: 20  VPSFPPFHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACN 63


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 325 GDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCNFSDIV 459
           G F+    T   V   S +V     Y ++PF+R      NFS IV
Sbjct: 30  GSFSKKSSTSQLVRTGSPSVEPTALYLQQPFVRTHLVKGNFSTIV 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,542
Number of Sequences: 5004
Number of extensions: 71106
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)