Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M09
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827...    29   3.6  
01_06_0154 - 27049218-27049517,27049679-27050107                       29   3.6  
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563...    29   6.2  

>08_02_0619 -
           19382172-19382366,19382453-19382545,19382621-19382702,
           19382793-19382903,19383323-19383681,19384330-19384533,
           19384582-19384756,19384885-19385474,19385555-19385800
          Length = 684

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +1

Query: 292 GKYSEGIIAAFGDFNSDELTDAFVIKNSSTVNVFLAYDKEPFLRPSEFTCNFSDIVITSI 471
           G + +G  A F  F+  +L   F   +   +N+  A+  E ++   +F    +D  +  +
Sbjct: 489 GAFKDGPNANFA-FSFKDL-HVFFKMDKMDINLVAAWYLEHYI---QFLVYPTDQTVVVL 543

Query: 472 VPGDYDGDAYMDIL 513
            P DYD DAYM+ L
Sbjct: 544 DPADYDKDAYMEFL 557


>01_06_0154 - 27049218-27049517,27049679-27050107
          Length = 242

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 848 GYPGDLXHHHHXRPEXNAGGG 786
           G PGD  HHHH +    AG G
Sbjct: 28  GAPGDHHHHHHYKQYCGAGDG 48


>05_05_0285 -
           23855219-23855371,23855391-23856063,23856239-23856301,
           23856478-23856604,23856751-23856897,23856968-23856974,
           23857203-23857379
          Length = 448

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 537 YFKFHNVSILWGGMPTLNCSDALPTKAITFEQPL 638
           Y+  +  +  W  +P  +C    P   ITFE+PL
Sbjct: 235 YYVTNTTTFKWVQLPRHSCDHGEPAVVITFEEPL 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,715,339
Number of Sequences: 37544
Number of extensions: 397876
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)