Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M07
         (890 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q651Z0 Cluster: RNA-binding protein-like; n=4; Oryza sa...    33   7.4  
UniRef50_UPI0000DB75E0 Cluster: PREDICTED: hypothetical protein;...    33   9.8  
UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2; ...    33   9.8  
UniRef50_Q7XES4 Cluster: Retrotransposon protein, putative, uncl...    33   9.8  
UniRef50_Q22037 Cluster: Heterogeneous nuclear ribonucleoprotein...    33   9.8  

>UniRef50_Q651Z0 Cluster: RNA-binding protein-like; n=4; Oryza
           sativa|Rep: RNA-binding protein-like - Oryza sativa
           subsp. japonica (Rice)
          Length = 604

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGG 785
           Q  G   GG+G GG G  G       G W RGGG
Sbjct: 304 QVGGNYGGGRGGGGGGPGGGGGGGGGGNWGRGGG 337


>UniRef50_UPI0000DB75E0 Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 343

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGP 782
           GG+ GG G GG G RG       G    GGGP
Sbjct: 152 GGSRGGSGRGGPGGRGFGDRGSRGSGRGGGGP 183


>UniRef50_Q65UU3 Cluster: Putative uncharacterized protein; n=2;
           Pasteurellaceae|Rep: Putative uncharacterized protein -
           Mannheimia succiniciproducens (strain MBEL55E)
          Length = 449

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 411 LLHSIYLGLCT*ILKNYF--SGFRCFRGLQIFIKFVEAVYHRAKVFLNSL 268
           LL  I+LGLC   + N F  S F  F G+ +F+ F+E + +  + F+NSL
Sbjct: 10  LLIIIFLGLCIVTIDNIFIVSDFVLF-GIFLFLLFLEVIINPKRNFINSL 58


>UniRef50_Q7XES4 Cluster: Retrotransposon protein, putative,
           unclassified; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           unclassified - Oryza sativa subsp. japonica (Rice)
          Length = 493

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -2

Query: 883 TXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGG 785
           T GG  GG   GG G RG+      G W  GGG
Sbjct: 191 TGGGNGGGGSGGGGGARGSSGGGGGGGWAGGGG 223


>UniRef50_Q22037 Cluster: Heterogeneous nuclear ribonucleoprotein
           A1; n=5; Caenorhabditis|Rep: Heterogeneous nuclear
           ribonucleoprotein A1 - Caenorhabditis elegans
          Length = 346

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGPE 779
           Q  GG  G QG GG G  G P   + G W   GGP+
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQQQQQGGW---GGPQ 309


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,334,368
Number of Sequences: 1657284
Number of extensions: 9023661
Number of successful extensions: 38866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37214
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)