Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M07
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   5.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   6.3  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   8.3  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    26   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 790 PPGXTPRSXPXXGXPXXXSPPPPAXP 867
           PPG  P   P  G      PPPP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGP 782
           GG  GG   G  G  G P     G+   GGGP
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 5.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 781 RAHPPGXTPRSXPXXGXPXXXSPPPP 858
           RA  P   P   P    P    PPPP
Sbjct: 217 RAVSPEIPPTYTPKQADPLPAPPPPP 242



 Score = 21.8 bits (44), Expect(2) = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 847 PPPPAXPXRXP 879
           PPPPA P + P
Sbjct: 273 PPPPATPSQPP 283


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 176 KEDNSINTLAESAKKTIEELREKVESAL 259
           KE NSI+ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 282 KLWHDGRQLQRIL*KSEARGSTESL-RSNFXVSKYITPN 395
           K W DGR+  RIL ++E R S  ++ RSN    +Y   N
Sbjct: 216 KKWSDGRR-DRILKQAEERRSNRAVGRSNLSGREYFESN 253


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 185 NSINTLAESAKKTIEELREKVESALRPGRLLRKTLARW 298
           ++ + LAE AK T++ L  K  +++     L K+ A+W
Sbjct: 307 SNTSALAEFAKSTVKTLYSKSPTSIAVTNRLIKSAAKW 344


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 146 VHAFVKRDAPKEDNSINTLAESAKKTIEELREKVESALRP 265
           V A +K+D  +E  S   L      TIE+L+ K E+   P
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPP 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,738
Number of Sequences: 5004
Number of extensions: 37846
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)