Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M07
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    33   0.27 
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    33   0.27 
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    33   0.27 
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    33   0.27 
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    33   0.27 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    31   1.5  
U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    29   3.4  
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    29   5.9  

>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGPE 779
           Q  GG  G QG GG G  G P   + G W   GGP+
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQQQQQGGW---GGPQ 309



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXE-XGVWXRGGG 785
           GG  G QG GG G  G P   +  G W + GG
Sbjct: 257 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 288


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGPE 779
           Q  GG  G QG GG G  G P   + G W   GGP+
Sbjct: 240 QQGGGGWGQQGGGGQGGWGGPQQQQQGGW---GGPQ 272



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXE-XGVWXRGGG 785
           GG  G QG GG G  G P   +  G W + GG
Sbjct: 220 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 251


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGPE 779
           Q  GG  G QG GG G  G P   + G W   GGP+
Sbjct: 239 QQGGGGWGQQGGGGQGGWGGPQQQQQGGW---GGPQ 271



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXE-XGVWXRGGG 785
           GG  G QG GG G  G P   +  G W + GG
Sbjct: 219 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 250


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGPE 779
           Q  GG  G QG GG G  G P   + G W   GGP+
Sbjct: 278 QQGGGGWGQQGGGGQGGWGGPQQQQQGGW---GGPQ 310



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXE-XGVWXRGGG 785
           GG  G QG GG G  G P   +  G W + GG
Sbjct: 258 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 289


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 886 QTXGGAXGGQGXGGXGXRGAPXXXEXGVWXRGGGPE 779
           Q  GG  G QG GG G  G P   + G W   GGP+
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQQQQQGGW---GGPQ 309



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 877 GGAXGGQGXGGXGXRGAPXXXE-XGVWXRGGG 785
           GG  G QG GG G  G P   +  G W + GG
Sbjct: 257 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG 288


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 877 GGAXGGQGXGGXG--XRGAPXXXEXGVWXRGGG 785
           GG  GG+G GG G   RG P     G W   GG
Sbjct: 130 GGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGG 162



 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 874 GAXGGQGXGGXGXRGAPXXXEXGVWXRGGG 785
           G  GG   GG G  G       G W RGGG
Sbjct: 33  GGWGGNRWGGGGGPGGWGNNGGGGWGRGGG 62


>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 877 GGAXG-GQGXG-GXGXRGAPXXXEXGVWXRGGG 785
           GG  G G+G G G G RG       G W RGGG
Sbjct: 59  GGRGGWGRGGGRGYGGRGGGWGGRGGGWGRGGG 91


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 877 GGAXGGQGXGGX-GXRGAPXXXEXGVWXRGGG 785
           GG  GG G GG  G  G     + G W  GGG
Sbjct: 221 GGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGG 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,540
Number of Sequences: 27780
Number of extensions: 222229
Number of successful extensions: 1126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)