Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M05
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    29   1.2  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    28   2.0  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    27   4.7  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   4.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   6.2  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   6.2  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    26   8.2  

>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 285 ATRLVRCAYGEGTRYIPLLIRARELWKEL-----NELTKTNIYEKCGVLNTGLGDSSFID 449
           A +LV   + EG+RY  + +  +  +K L     ++LTK++      V N  LGD  F  
Sbjct: 77  ANQLVGIEHVEGSRYALIFLSEKLDFKSLKVIANHQLTKSS-KSLSNVSNKPLGDQLFRS 135

Query: 450 NARRSAEIYGLEIENMTAEDIKKRWNGIQVPGDYV 554
           N+  S  +   E+  + ++  +      Q P  +V
Sbjct: 136 NSLMSPSLLKKELHRIQSDASQANERESQAPHSFV 170


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 331 MYLVPSP*AHRTSLVAPWWLPELCGGVCSSSISTFNP 221
           M+L+    A   +L  PWWLP +       S+S+F P
Sbjct: 258 MFLIWGVVAIAQALSIPWWLPAVASKEHRKSLSSFIP 294


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 309 YGEGTRYIPLLIRARELWKELNELTKTNIYEKCGVLNTGLGDSSFIDNARRSAE 470
           YG  T +IP+L   R   ++L +  K      CG++ T    S  +D A +  +
Sbjct: 24  YGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLIVTSQRVSETLDEALKQED 77


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 438 SFIDNARRSAEIYGLEIENMTAEDIKKRWNGIQVPGD 548
           + +D  RRS +   LE+EN++++  ++  +G   P +
Sbjct: 847 NLLDAERRSKKAIQLELENLSSQAFRRNLSGSSSPSE 883


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 536 LNAVPTFLYILSRHILNLQSVDLSASASV 450
           +++VP +L I S H+L L  VDL     V
Sbjct: 132 ISSVPIYLRIYSPHVLTLTLVDLPGLTKV 160


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 515 LYILSRHILNLQSVDLS--ASASVINKTRIP*TRVQNSTLLVNVCLCQFIQL 366
           LY+L+  +L   SV LS  +SA+V + T +      + T+ +NVCLC F  +
Sbjct: 5   LYVLASLVLFGLSVLLSLYSSANVYSATVMISQSPVHITIGLNVCLCLFFAI 56


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 386  LCQFIQLLPEFSGSYQERNVSGAFA 312
            +  F ++LPEFS SY E  +  A A
Sbjct: 1291 MIDFFKVLPEFSSSYVEPTIKCALA 1315


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 596 SCKCLRQAIKGSWGSSNIRLQSLV 667
           SC C +  ++G WG +     SLV
Sbjct: 311 SCPCCKTELEGGWGITRAYFNSLV 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,333,274
Number of Sequences: 5004
Number of extensions: 64539
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)