Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M04
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    31   0.28 
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.6  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.5  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   6.7  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   8.0  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 171 YDPFSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 317
           Y+   P  ++S +   +L S L      LDD+ K L+L FP++I + RV
Sbjct: 153 YELPDPETKKSKIK--ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 636 LTSAWRQPRRPMRSPKAVXATTYAVXIRDDAGVLADSHINLIQIXNVRI 782
           L +   +P+RP+ +P      T    + D  G++ D ++NL+   N+ +
Sbjct: 145 LRTQHNRPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNV 193


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 124 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 219
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 198 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 377
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 378 VKAKN 392
            K  N
Sbjct: 163 SKKLN 167


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 866 GXGGXGGGXXGGXGG 822
           G GG GGG  GG GG
Sbjct: 125 GFGGRGGGRMGGRGG 139


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.6 bits (46), Expect(2) = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 832 PPXXPPPXPP 861
           PP  PPP PP
Sbjct: 20  PPSQPPPPPP 29



 Score = 21.4 bits (43), Expect(2) = 6.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 823 PPXPPXXPPPXP 858
           PP  P  PPP P
Sbjct: 5   PPGNPPPPPPPP 16


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 216 HSLWSNLANEMQHLDD--MMKELSL-KFPSI-INEGRVEGDKYQISIHLPGY---EQKDI 374
           H++  N A E   ++D  ++K +S   F S+ + + R  GD + I I        + + I
Sbjct: 573 HTIVPNSAPEHPSINDYKILKPISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVI 632

Query: 375 NVKAKNGVLMVQANSAF 425
           NV+A+  +LM Q  S F
Sbjct: 633 NVRAERAILMSQGESPF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,038
Number of Sequences: 5004
Number of extensions: 62130
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)