Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_M02
(961 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.74
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.74
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.97
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.74
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Frame = +2
Query: 794 PXPPPXLXPLPXP--PXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXAXPXLSLXPPP 961
P PP L P P P P P S A P A P P P A P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXP-XAXPXLSLXPPP 961
P P PLP P P P P AA APP P P A P S+ P
Sbjct: 440 PMGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 26.6 bits (56), Expect = 5.2
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Frame = +2
Query: 794 PXP-PPXLXPLPXP--PXRXRPXXP-GPRSRXNAXPXAAXAPPLXPXPXAXPXL---SLX 952
P P PP L P P P P P G + P A APPL A P L +
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 953 PPP 961
PPP
Sbjct: 476 PPP 478
Score = 26.2 bits (55), Expect = 6.9
Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Frame = +2
Query: 785 RXXPXPPPXLXPLPXPPX-------RXRPXXPGPRSRXNAX----PXAAXAPPLXPXPXA 931
R P PPP PP P P PRS P APP P P +
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP-PPPPRS 368
Query: 932 XPXLSLXPPP 961
P PPP
Sbjct: 369 APSTGRQPPP 378
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.74
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXA 931
P P P P PP P P P P + APP+ P P A
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV-PTPSA 1224
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXP-XAAXAPPLXPXPXAXPXLS 946
P P P + P PP P P P + P A APP+ P +S
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXAXPXLSLXPPP 961
P P P + P P P P P+ A P A + + P P + PPP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAP--PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXP-XAAXAPPLXPXPXAXP 937
P P P P P P P P S P AA PP+ P A P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXAXP 937
P P P + P P P P P P + APP+ A P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/48 (29%), Positives = 17/48 (35%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXAXP 937
P P P + P P P P P P + APP+ A P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXA 931
P PPP P P P P P + +A PP+ P P A
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV-PVPTA 1234
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.97
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +2
Query: 803 PPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXPXAXPXLSLXPPP 961
PP P P RP P P A APP+ A P S PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPI--PSKAPPIPSSLPPP 174
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXP--XPXAXPXLSLXPPP 961
P P L P P R P P S A P + APP+ P A P + PP
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPAS---APPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = -2
Query: 954 GXRLRXGXAXGXGXRGGAXAAXGXALXRERGPGXXGRXRXGGXGRGXRXGGGXGXXR 784
G + G G RGG G G G R GG RG GG G R
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -2
Query: 918 GXRGGAXAAXGXALXRERGPGXXGRXRXGGXGRGXRXGGGXGXXR 784
G RGG + G RG GR GG GRG GGG G R
Sbjct: 6 GSRGGRGGSRGG-----RGGFNGGRGGFGG-GRGGARGGGRGGAR 44
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +2
Query: 794 PXPPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPLXPXP 925
P PPP P+ PP P P P A + P P P
Sbjct: 1705 PTPPPP--PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 800 PPPXLXPLPXPPXRXRPXXPGPRSRXNAXPXAAXAPPL 913
PP P P PP P P A P +A PPL
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMP-AGPPSAPPPPL 1735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.146 0.514
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,669
Number of Sequences: 5004
Number of extensions: 7023
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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