Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_M01
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.55 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   2.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 614  PPLPRIVSRAPSTSAPXXXTXLPXSN-TPXPT 706
            PP+P   S APS S P      P SN +P PT
Sbjct: 1237 PPVPAPSSEAPSVSTPRSSVPSPHSNASPSPT 1268



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +2

Query: 515  PPSSPALEPDRGRTCX*XARVYQTPSXRNGTADPPLPRIVS---RAPSTSAPXXXTXLPX 685
            PPS+P  +P         ARV   P   +     PLP   +     PST+ P     +P 
Sbjct: 991  PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPP---VPIPT 1047

Query: 686  SNTPXP 703
            S  P P
Sbjct: 1048 STPPVP 1053


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 572 RVYQTPSXRNGTADPPLPRIVSRAPSTSAPXXXTXLPXSNTP 697
           R+  + +  +G   PPLP+      S ++P   T LP S+TP
Sbjct: 400 RILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLP-SSTP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,428
Number of Sequences: 5004
Number of extensions: 33939
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)