Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L23
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 235 GGQXFSRGLFFQXXX*TFXXWXFXVPIF 152
           G   F+RGL        +  W + VP+F
Sbjct: 203 GTDYFNRGLLSASYLVCYGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 235 GGQXFSRGLFFQXXX*TFXXWXFXVPIF 152
           G   F+RGL        +  W + VP+F
Sbjct: 79  GTDYFNRGLLSASYLVCYGIWVYFVPLF 106


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 605 PPPPPXXGG 631
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 596 PXXPPPPPXXGG 631
           P  PPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 596  PXXPPPPPXXG 628
            P  PPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,617
Number of Sequences: 438
Number of extensions: 9042
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)