Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L22
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    28   7.4  
U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical
           protein C17H11.2 protein.
          Length = 738

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 174 CPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDI 290
           C   + N  R+ ++   +CQ++R  VP P P+S   V +
Sbjct: 140 CLEAEENSFRDCYNLYKKCQMLRPGVPVPRPMSLLNVSV 178


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 83  CLSVLGL--IASAVAFGENLDPADDPKKHQKTLSELRLELHS*IFLKKFSMSISKGTCTR 256
           C+ V+G   I     FG  LD  DDP    K + + R+E      ++K   +++     R
Sbjct: 315 CIDVVGAYYIDRLHFFGRRLD--DDPLSWLKEVQQRRIEAMKKEAMRKLFETVTALHHIR 372

Query: 257 STTFKLLQSRYTE 295
            T FK L   Y E
Sbjct: 373 LTAFKQLTQNYDE 385


>U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical
           protein ZC204.10 protein.
          Length = 238

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 318 DILRLNYYS-VYLLC-SNLKVVDLVQVPLLIDIENFLRNIHECSSSRSSDRVF*CFFGS 148
           D+  LN++S V LL  S ++V D + +  +  +E  + N+    SS SSD +  CF  +
Sbjct: 159 DVPLLNFFSSVELLSVSEIRVSDFIIIQNVRSLELHVVNLDYILSSNSSDILLYCFLSN 217


>U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical
           protein F59G1.8a protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 423 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSIXDLQL 557
           L + K +   NR+    I+ SDA E  + T+  +++FP +  LQL
Sbjct: 168 LKTAKILKARNRRQLSSIILSDAHETKFSTIAHSSLFP-LLHLQL 211


>U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical
           protein F59G1.8b protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 423 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSIXDLQL 557
           L + K +   NR+    I+ SDA E  + T+  +++FP +  LQL
Sbjct: 171 LKTAKILKARNRRQLSSIILSDAHETKFSTIAHSSLFP-LLHLQL 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,965
Number of Sequences: 27780
Number of extensions: 301714
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)