Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_L19
(1130 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 37 0.004
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.042
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -1
Query: 338 PPPPPPXXGXXPRXXXPGXPPPGGXXXXXGXRPAXXG 228
PPPPPP G P P PPPG PA G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXPXPPPXXPPPXPXXXPXRGG 457
PPP PP P P PPP P + G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 359 PXXXXXXPPXPPXPXPPPXXPPPXP 433
P PP PP PP PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 380 PPXPPXPXPPPXXPPPXPXXXPXRGG 457
P PP P PPP PP P G
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 813 PPPPGXXPPGGXGXPPXGG 869
PPPPG PP PP G
Sbjct: 13 PPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 380 PPXPPXPXPPP--XXPPPXPXXXPXRG 454
PP P P PPP PP P P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.042
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 356 PPXXXXXXPPXPPXPXPPPXXPPPXPXXXP 445
PP PP PP PPP PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 32.3 bits (70), Expect = 0.13
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXPXPPPXXPPP 427
PPP P PP P PP PPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 30.3 bits (65), Expect = 0.52
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +2
Query: 320 GGGGGGXXXAXPPPXXXXXXPPX--PPXPXPPPXXPPPXPXXXPXRGG 457
GG + PP PP P P PPP PP P P G
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Frame = +2
Query: 347 AXPPPXXXXXXPPXPPXP----XPPPXXPPPXP 433
A PP PP P P PP PPP P
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.17
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 886 PXXPPXPPXGGXPXPPGGXXPGGGGXPP 803
P PP P GG P PP G G PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXP------XPPPXXPPP 427
PPP PP PP P PPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.90
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXPXPPPXXPPPXPXXXP 445
PP PP PP P PPP P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.90
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 338 PPPPPPXXGXXPRXXXPGXPPP 273
PPPPPP G P PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 332 GGXXXAXPPPXXXXXXPPXPPXPXP 406
GG PPP PP PP P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXPXPPP----XXPPPXP 433
PPP P P P PPP PPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXPXPPPXXPPP 427
P P PP P PPP PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +3
Query: 804 GGXPPPPGXXPPG--GXGXPP 860
GG PPPP PPG G G PP
Sbjct: 759 GGPPPPP--PPPGVAGAGPPP 777
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Frame = +2
Query: 353 PPPXXXXXXPPXPPXPXP-PPXXP----PPXPXXXPXRGG 457
PPP P P P P PP P PP P P G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 347 AXPPPXXXXXXPPXPPXPXPPPXXPPPXP 433
A P P PP PP PP P P P
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Frame = +2
Query: 305 GXGPXGGGGGGXXXAXPPPXXXXXXP---PXPPXPXPPPXXPPPXPXXXPXRG 454
G P G G PPP P PP P PPP P P G
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP--PPPPPRSAPSTG 373
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 380 PPXPPXPXPPPXXPPPXPXXXP 445
PP P P PP PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAP 436
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +2
Query: 329 GGGXXXAXPPPXXXXXXPPXPPXPXPPPXXPPPXPXXXP 445
G + PP PP P P PP PP P P
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAP-PSLPPSAPPSLPMGAP 444
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 444 GXXXGXGGGXXGGGXGXGGXGGXXXXXXGG 355
G G GGG G G GG GG GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 380 PPXPPXPXPPPXXPPPXPXXXP 445
PP P P P P PP P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAP 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.162 0.579
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,390
Number of Sequences: 5004
Number of extensions: 22234
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 601638964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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