Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L19
         (1130 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.70 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = -2

Query: 877 PPXPPXGGXPXPPGGXXPGG-GGXPP 803
           P  P  G  P P  G  PGG  G PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 314 PXGGGGGGXXXAXPPPXXXXXXPPXPPXPXPPPXXPPPXP 433
           P  G  G        P       P  P   PPP  PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 823 RGXXPRGGXGPPXXGXXGGPXXXPP 897
           RG  P    GPP  G  G P    P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -2

Query: 895 GGXPXXPPXPPXGGXPXPPGGXXP 824
           G  P     PP GG P  P    P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -2

Query: 886 PXXPPXPPXGGXPXPPGGXXPGGGGXPP 803
           P     PP  G P PP        G PP
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPP 431


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 380 PPXPPXPXPPPXXPPP 427
           PP P  P PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 87  PPXPXPPXPXPXXXPP 40
           PP P PP P P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 336 PPPPPPXGPXP 304
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 338  PPPPPPXXG 312
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.162    0.579 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,566
Number of Sequences: 438
Number of extensions: 5679
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38198817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)