Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_L17
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 93 5e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 53 6e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 47 4e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 44 2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 42 1e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.004
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.017
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 34 0.023
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.031
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.039
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.21
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 2.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.0
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 26 6.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 93.1 bits (221), Expect = 5e-20
Identities = 41/57 (71%), Positives = 43/57 (75%)
Frame = +1
Query: 238 GVMVGMGQKDSYVGDEAQSKRGILTLKXPIEHXIIXNWDDMXXXWHQTLXKMXXVFP 408
G+MVGMGQKDSYVGDEAQSKRGILTLK PIEH I+ NWDDM WH T V P
Sbjct: 42 GIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAP 98
Score = 84.2 bits (199), Expect = 2e-17
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +3
Query: 117 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 239
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 52.8 bits (121), Expect = 6e-08
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +3
Query: 123 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 236
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
Score = 52.0 bits (119), Expect = 1e-07
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = +1
Query: 241 VMVGMGQKDSYVGDEAQSKRGILTLKXPIEHXIIXNWDDMXXXW 372
VM QKD +VG EAQ+ RG+L ++ PIE II NW DM W
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIW 90
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.8 bits (106), Expect = 4e-06
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 129 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 227
A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 42.3 bits (95), Expect = 9e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +1
Query: 262 KDSYVGDEAQSKRGILTLKXPIEHXIIXNWDDMXXXWHQTLXKMXXVFP 408
KD VGDEA++ R +L +K P+E+ II ++++M W T + + P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 181 ATTRPAPSSRPSWVALATRGVMVGMGQK---DSYVGDEAQSKRGI-LTLKXPIEHXIIXN 348
A++ PA SS+PS++A G + D ++G++A K +L PI H I N
Sbjct: 42 ASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIEN 101
Query: 349 WDDMXXXWHQTLXK 390
WD M W Q+L K
Sbjct: 102 WDHMERFWQQSLFK 115
Score = 40.7 bits (91), Expect = 3e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 135 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 218
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 120 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGR--YGPERLLRG*RGPE 293
D+V+A+V+D GS + GF+G+D P+ V PS G + DGR +G E + + G E
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG----EFSDGRRLFGEEYIYKSNPGME 64
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 96 TQSSKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 230
T S + +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 15 TPSFQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.017
Identities = 24/83 (28%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Frame = +2
Query: 608 PPPPPPXXGXXXXPXXRXXFXXXXLXXXPPPXTPXXXXXXXXXXXPPXXXXXPPPPXXXX 787
PPPPPP P L PPP P PP PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSL---PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 788 XP-----XPPXGGXFXFFXPPPP 841
P PP PP P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAP 391
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/88 (25%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Frame = +1
Query: 607 PPPPPPPXGXXXXXXXXPXFXXXXXFXXPPPXXTXXXXXXXXXXXPPPXXXXXPXPXXXX 786
PPPPPPP P PPP PP P P
Sbjct: 311 PPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 787 XP----XPPPGGXFXXFLXPPPXXXXXP 858
P PPP PP P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/102 (21%), Positives = 24/102 (23%)
Frame = +3
Query: 555 RXXPPXXPPXXXXXXXXSPPPPPPXXGVXXXPPXAXXFXXXXFXXXPPXXHXXXXXXXXX 734
R PP PP PPP V P PP +
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
Query: 735 XXXPPXXXXXPXPXXXXXPPPPPXGXFXXFSXPPPPXXXXTP 860
P P PP P G + P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMG--APAAPPLPPSAPIAP 457
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/111 (20%), Positives = 27/111 (24%)
Frame = +3
Query: 471 GKKXXPXXFXGKLLXPPPPXXFFPXKXXRXXPPXXPPXXXXXXXXSPPPPPPXXGVXXXP 650
G++ P + PP P P + PP PP P P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Query: 651 PXAXXFXXXXFXXXPPXXHXXXXXXXXXXXXPPXXXXXPXPXXXXXPPPPP 803
P A PP P P P PPP P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP---AAPPLPPAAPAPPPAP 480
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 120 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 221
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.052
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 516 PPPPXXFFPXKXXRXXPPXXPPXXXXXXXXSPPPPPPXXGVXXXPP 653
PPPP P P PP PPPPP G PP
Sbjct: 734 PPPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 32.7 bits (71), Expect = 0.069
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +1
Query: 517 PPPPXFFFPXKXRGXXPLXXPPPXXXXXXFPPPPPPP 627
P PP P G P PPP PPPPPPP
Sbjct: 750 PVPP----PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 32.3 bits (70), Expect = 0.091
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 517 PPPPXFFFPXKXRGXXPLXXPPPXXXXXXFPPPPPPPXG 633
PPPP P P+ P P PPPPP G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 519 PPPXXFFPXKXXRXXPPXXPPXXXXXXXXSPPPPPPXXGV 638
P P P PP PP PPPPPP V
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 29.5 bits (63), Expect(2) = 0.031
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 747 PXXXXXPXPXXXXXPPPPPXGXFXXFSXPPPP 842
P P P PPPPP PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 742 PPPXXXXXPXPXXXXXPXPPPGGXFXXFLXPPP 840
PPP P P P PPP PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 744 PPXXXXXPXPXXXXXPPPPPXGXFXXFSXPPPP 842
PP P P P PPP PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 789 PPPPPXGXFXXFSXPPPP 842
PPPPP G PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 23.0 bits (47), Expect(2) = 0.031
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 606 SPPPPPPXXGVXXXPP 653
SPPPPPP V P
Sbjct: 731 SPPPPPPAVIVPTPAP 746
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.5 bits (73), Expect = 0.039
Identities = 29/113 (25%), Positives = 30/113 (26%), Gaps = 4/113 (3%)
Frame = +3
Query: 516 PPPPXXFFPXKXXRXXPPXXPPXXXXXXXXSPPPPPPXXGVXXXPPXAXXFXXXXFXXXP 695
PPPP P + PP PP PPPP PP P
Sbjct: 208 PPPPMHHKPGEHM---PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Query: 696 PXXHXXXXXXXXXXXXPPXXXXXPXPXXXXXP----PPPPXGXFXXFSXPPPP 842
P H P P P PPPP PPPP
Sbjct: 263 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 33.5 bits (73), Expect = 0.039
Identities = 29/113 (25%), Positives = 30/113 (26%), Gaps = 4/113 (3%)
Frame = +3
Query: 516 PPPPXXFFPXKXXRXXPPXXPPXXXXXXXXSPPPPPPXXGVXXXPPXAXXFXXXXFXXXP 695
PPPP P + PP PP PPPP PP P
Sbjct: 221 PPPPMHHEPGEHM---PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Query: 696 PXXHXXXXXXXXXXXXPPXXXXXPXPXXXXXP----PPPPXGXFXXFSXPPPP 842
P H P P P PPPP PPPP
Sbjct: 276 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 33.5 bits (73), Expect = 0.039
Identities = 29/113 (25%), Positives = 30/113 (26%), Gaps = 4/113 (3%)
Frame = +3
Query: 516 PPPPXXFFPXKXXRXXPPXXPPXXXXXXXXSPPPPPPXXGVXXXPPXAXXFXXXXFXXXP 695
PPPP P + PP PP PPPP PP P
Sbjct: 234 PPPPMHHEPGEHM---PP--PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Query: 696 PXXHXXXXXXXXXXXXPPXXXXXPXPXXXXXP----PPPPXGXFXXFSXPPPP 842
P H P P P PPPP PPPP
Sbjct: 289 PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.21
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 556 GXXPLXXPPPXXXXXXFPPPPPPP 627
G P PPP PPPPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.85
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 771 PXXXXXPPPPPXGXFXXFSXPPPP 842
P PPPPP G F S PPPP
Sbjct: 5 PPGNPPPPPPPPG-FEPPSQPPPP 27
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 565 PLXXPPPXXXXXXFPPPPPPPXG 633
P PPP PPPPPP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 142 STMAPACARPVSPATTRPAPSSRPSWVALATRGVMVGM 255
+++ PA + P A P P+ PS +AL TRG +GM
Sbjct: 398 TSLFPAMSLPPQ-AQFSPYPAVAPSPLALQTRGAPIGM 434
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 744 PPXXXXXPXPXXXXXPPPPPXGXFXXFSXPPPP 842
P P P PPPPP S PP P
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 604 FPPPPPPP 627
FPPPPPPP
Sbjct: 944 FPPPPPPP 951
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 226 LATRGVMVGMGQKDSYVGDEAQSKRGILTLKXPIEHXII 342
L+ +M+G +Y+G AQ KR +LT + I +I
Sbjct: 160 LSQYAIMIGAIHGFAYIGLAAQGKRALLTARVTIIGYVI 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,907
Number of Sequences: 5004
Number of extensions: 56928
Number of successful extensions: 376
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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