Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L15
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    28   2.1  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.3  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 163 FVEKQKKILSLFYNVNEISYEAEYYKVAQDFNIEASKGLXHKHESLRK 306
           F+E  K++     + + +S + E+  + +DFN+     L  ++E LRK
Sbjct: 8   FLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRK 55


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +1

Query: 121 STVPEFKTTPVDAAFVEKQKKILSLFYNVNEISYEAEYY-KVAQDFNIEASKGLXHKHES 297
           ++V EF+  P++     K +K  + F + +  S E E +     D  IE+S  L   HES
Sbjct: 140 NSVTEFEK-PIETK-KSKHRKSRNKFLDKSSGSMEIESWDNSTSDSIIESSSRL---HES 194

Query: 298 LRKFHDDVQGSDSFPRIWNSRS 363
           +    +D++ SDS    W+  S
Sbjct: 195 ISLRENDIRSSDSKSVGWDDNS 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,339
Number of Sequences: 5004
Number of extensions: 59636
Number of successful extensions: 138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)