Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_L12
(994 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M98776-1|AAB47721.1| 644|Homo sapiens keratin 1 protein. 31 6.5
BC063697-1|AAH63697.1| 644|Homo sapiens keratin 1 (epidermolyti... 31 6.5
AF304164-1|AAG41947.1| 644|Homo sapiens keratin 1 protein. 31 6.5
AF237621-1|AAF60327.1| 644|Homo sapiens keratin 1 protein. 31 6.5
X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein ... 31 8.6
U36561-1|AAA79948.1| 528|Homo sapiens fus-like protein protein. 31 8.6
S62140-1|AAB27102.1| 526|Homo sapiens TLS protein. 31 8.6
CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein. 31 8.6
BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from t(... 31 8.6
BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in t(1... 31 8.6
BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in t(1... 31 8.6
BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in t(1... 31 8.6
AJ549096-1|CAD79346.1| 157|Homo sapiens BBF2H7/FUS protein prot... 31 8.6
AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein. 31 8.6
AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein. 31 8.6
AB208902-1|BAD92139.1| 300|Homo sapiens fusion (involved in t(1... 31 8.6
>M98776-1|AAB47721.1| 644|Homo sapiens keratin 1 protein.
Length = 644
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG G G GGG G G GGG GGG
Sbjct: 86 RGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGG 117
>BC063697-1|AAH63697.1| 644|Homo sapiens keratin 1 (epidermolytic
hyperkeratosis) protein.
Length = 644
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG G G GGG G G GGG GGG
Sbjct: 86 RGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGG 117
>AF304164-1|AAG41947.1| 644|Homo sapiens keratin 1 protein.
Length = 644
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG G G GGG G G GGG GGG
Sbjct: 86 RGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGG 117
>AF237621-1|AAF60327.1| 644|Homo sapiens keratin 1 protein.
Length = 644
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG G G GGG G G GGG GGG
Sbjct: 86 RGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGG 117
>X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein
protein.
Length = 525
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 387 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 418
>U36561-1|AAA79948.1| 528|Homo sapiens fus-like protein protein.
Length = 528
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 391 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 422
>S62140-1|AAB27102.1| 526|Homo sapiens TLS protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from
t(12;16) malignant liposarcoma protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>AJ549096-1|CAD79346.1| 157|Homo sapiens BBF2H7/FUS protein
protein.
Length = 157
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 121 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 152
>AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein.
Length = 525
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 387 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 418
>AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein.
Length = 526
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 388 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 419
>AB208902-1|BAD92139.1| 300|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) isoform a variant
protein.
Length = 300
Score = 30.7 bits (66), Expect = 8.6
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -2
Query: 933 RGXXXXRGXXXXGXXGGGXGXGAX*GGGDGGG 838
RG RG G GGG G GGG GGG
Sbjct: 162 RGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGG 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,968,337
Number of Sequences: 237096
Number of extensions: 834466
Number of successful extensions: 8883
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6927
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13324901280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -