Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L11
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   128   5e-30
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    79   6e-15
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    76   3e-14
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    76   3e-14
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    76   4e-14
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    50   2e-06
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       50   2e-06
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       50   2e-06
U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    30   2.6  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  128 bits (309), Expect = 5e-30
 Identities = 60/89 (67%), Positives = 67/89 (75%)
 Frame = +2

Query: 236 VIAEKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRKAVRSVGDGEAVEFAV 415
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 416 VAGEKGFEAAGVTXPGGEPVKRSPYAADK 502
           V G KG EAA VT P G PV+ S YAAD+
Sbjct: 76  VEGSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
 Frame = +2

Query: 239 IAEKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRK-AVRSVGDGEAVEFAV 415
           I   + G VKW++V   YGFI+RND  +D+FVHQTAI  +   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 416 VAGEKGFEAAGVTXPGGEPVKRSPY 490
           V G+ G EAA VT P G+ V  S Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
 Frame = +2

Query: 236 VIAEKVSGTVKWFNVKSGYGFINRN---DTXEDVFVHQTAIXXNNPRKA-VRSVGDGEAV 403
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI  ++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 404 EFAVVAGEKGFEAAGVTXPGGEPVKRSPYA 493
            F +V G KG EAA VT P GE V+ S +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
 Frame = +2

Query: 236 VIAEKVSGTVKWFNVKSGYGFINRN---DTXEDVFVHQTAIXXNNPRKA-VRSVGDGEAV 403
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI  ++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 404 EFAVVAGEKGFEAAGVTXPGGEPVKRSPYA 493
            F +V G KG EAA VT P GE V+ S +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +2

Query: 236 VIAEKVSGTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRK-AVRSVGDGEAVEFA 412
           V+   + G VKW++V   YGFI+R+D  +DVFVHQTAI  ++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 413 VVAGEKGFEAAGVTXPGGEPVKRSPY 490
           +V G+ G EAA VT P G  V  S Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 257 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRKAVRSVGDGEAVEFAVV--AGEK 430
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 431 GFEAAGVT 454
           G EA  V+
Sbjct: 80  GREAYAVS 87


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 257 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRKAVRSVGDGEAVEFAVV--AGEK 430
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 431 GFEAAGVT 454
           G EA  V+
Sbjct: 111 GREAYAVS 118


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 257 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRKAVRSVGDGEAVEFAVV--AGEK 430
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 431 GFEAAGVT 454
           G EA  V+
Sbjct: 111 GREAYAVS 118


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = +2

Query: 257 GTVKWFNVKSGYGFINRNDTXEDVFVHQTAIXXNNPRKAVRSVGDGEAVEFAVV--AGEK 430
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 431 GFEAAGVT 454
           G EA  V+
Sbjct: 111 GREAYAVS 118


>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
 Frame = +2

Query: 419 AGEKGFEAA--GVTXPGGEPVKRSPYA-ADKXXGYHRQYFPXQXGXRXXEGAPXXGGLXR 589
           AG+ G  ++  G   P G+P  R P   A    G  +   P Q G R  +G P   G   
Sbjct: 214 AGQPGSSSSEPGQPGPNGQPGPRGPPGQAGSPGGNGQPGGPGQPGQRGSDGQPGNDGQPG 273

Query: 590 XXPXPNQGXAPGDEXQXXGIVPSH 661
               P Q    G++    GI P +
Sbjct: 274 APGQPGQSGGSGEK----GICPKY 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,321
Number of Sequences: 27780
Number of extensions: 220086
Number of successful extensions: 497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)