Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L10
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    29   1.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   8.1  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 439 LSILYSGLCAXEVKIVDGPSKYPSCT-CTRXMXPVCGSDXITYNNDCLLNCAXINDSRLG 615
           LS   SG CA    I+D  S+Y  C  C +   P  G   +   +D LLN      S+ G
Sbjct: 158 LSASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVC-SDVLLNDDSNCPSKKG 216

Query: 616 IQYY 627
           I  Y
Sbjct: 217 INNY 220


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 196  YRNQRPVCGTDGKTYNNECLLDC 264
            Y N  P C TD +  +  C +DC
Sbjct: 955  YANDEPPCPTDEEIQHTLCTIDC 977


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 315  RAGSLISDP*TGIISGGTVEQALVVVCFPISSAHWSLVSIART-AWWICKCCNHL 154
            RA + + +   G+++G +  + L+V C  +S+A   LV+ +R  A +  K  +HL
Sbjct: 959  RATTTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASKVQDHL 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,211
Number of Sequences: 5004
Number of extensions: 53076
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)