Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L08
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    31   1.6  
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390...    30   2.1  
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     29   3.7  
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98...    28   8.5  

>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 412 HQHLVPVQRHRLHFXGHVHEXQHQHLVPVHRHRLHFH 302
           H H  P ++HR    G  H  Q QH  P H H+ H H
Sbjct: 46  HHHANPRRQHRGGGGGAYHHHQ-QHYQPHHHHQHHQH 81


>03_01_0520 -
           3900387-3900613,3900812-3900853,3902092-3902210,
           3903633-3903712,3903829-3903856,3904151-3904272,
           3904714-3904857,3904897-3906327
          Length = 730

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 391 QRHRLHFXGHVHEXQHQHLVPVHRHRLHFHVHEFQHQY 278
           Q H   +  H H+ Q++H     ++R+HF  H  Q QY
Sbjct: 148 QNHHQQYQQHHHQQQYEH-----QNRIHFQHHRQQQQY 180



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 430 HVXEFQHQHLVPVQRHR--LHFXGHVHEXQHQHLVPVHRHRLHFHVHEFQHQY 278
           H  +++HQ+ +  Q HR    +  H H  Q+ H     + +  +     Q QY
Sbjct: 159 HQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQYQHQNLQQQY 211


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 358 HEXQHQHLVPVHRHRLHFHVHEFQHQYXVLVQR 260
           H  QH H    H HR H H  +  H +    QR
Sbjct: 126 HRDQHDHQSQRHHHRHHHHQRQRHHHHHQRQQR 158


>10_01_0075 -
           979335-979954,980136-980405,980949-980989,981563-981663
          Length = 343

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 388 RHRLHFXGHVHEXQHQHLVPVHRHRLH 308
           +H L     +H  QHQ  VP H H+ H
Sbjct: 94  KHLLSATPFLHHHQHQQYVPHHHHQPH 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,383
Number of Sequences: 37544
Number of extensions: 135243
Number of successful extensions: 417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)