Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L07
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.4  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   4.3  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   7.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.8  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 19  LTIGNSLRFENVKKLALSTQIAYSNLARNRFDKNSGISFNSFTRNILDI*TNTSHNVFF* 198
           L I N+LR    K +    Q+   N++RN   +   + F+  +RN L      ++ +FF 
Sbjct: 458 LDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFL 517

Query: 199 SYLDRF 216
            +  R+
Sbjct: 518 PHSTRY 523


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 92  FEYAICVLSASFLTFSNLKEFPIV 21
           FEYA+ + S+ F  F+NL+E  I+
Sbjct: 442 FEYAVVLFSSFFQNFANLEEKIII 465


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 121 NFCRSDCAPDLNTQSA 74
           N+CR  CAP+L+ ++A
Sbjct: 557 NYCRHKCAPNLDAEAA 572


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 407 HEDELNLAR*CLCEETHYDQKSILT*IIFRKYHP 306
           H DE+     CL E    D+KSI    + RKY+P
Sbjct: 220 HRDEMKTLYNCLYELIDRDKKSIYN-YLRRKYNP 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,496
Number of Sequences: 5004
Number of extensions: 48112
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)