Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L03
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    30   0.47 
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    29   0.63 
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.3  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.4  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   5.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.8  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 627 LKEVSMKQLISF*IEYHDRWSDNXISCTXNISKTSIHN 514
           L + S+   ++F +E+H+ +  N  + T NI  T IHN
Sbjct: 522 LIDSSLISSLAFLLEHHEVYGSNLFASTTNIMSTFIHN 559


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 252

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 61 SAGPQAQDSNLKEFPIVRW 5
          SA PQ+Q  NLK F I RW
Sbjct: 11 SANPQSQGENLKTFEIYRW 29


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 KNGVASSLNYVDLNGTSDQLLKPYPSLKDNLIPDSAKDLPSNKTIIS 473
           +N V+     VD++    +++     L   LIP +  DLPS+  I S
Sbjct: 652 RNKVSLKGASVDISSKDKEIISQKKQLSPKLIPSTPYDLPSSSQISS 698


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 301 FHRPKPKGKLFAGTKSPLLMAFSRSAGVFHS*ST--SFQANRS 179
           F+R +   + F  T+SP   + SRS+   H  S+  SF +NRS
Sbjct: 43  FYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRS 85


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 342 HHSSTWAPLQTICFSIALSPKANYSLVQSHHF*WHSHV 229
           H++ +W P +T+     L  K +  L+    F W  H+
Sbjct: 193 HYALSWLPAKTLAREAILKAKDSPILIVDQFFPWKGHL 230


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 348 SSLNYVDLNGTSDQLLKPYPSLKD-NLIPDSAK--DLPSNKTIISVFRI 485
           + LN +DLN +SDQ L   PSL+  +  PDS K  + P  + +I++  I
Sbjct: 65  NQLNELDLNDSSDQ-LDSRPSLRRVSSAPDSHKGVEAPPPRPLINMSNI 112


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/87 (24%), Positives = 42/87 (48%)
 Frame = -3

Query: 289 KPKGKLFAGTKSPLLMAFSRSAGVFHS*STSFQANRSCGVAASHDATTKAMANATSFIVY 110
           +P+   F  T +  +MA + + G  H   T  Q  ++ G   +++  ++ + + ++ I+ 
Sbjct: 490 QPQRTGFGQTPNAPMMAPNHT-GYVHPQPTGLQ-RQTTGYTGNNNPYSRPLQSQSTGILQ 547

Query: 109 ERVYNEEYRQGQSTTGSAGPQAQDSNL 29
           ++      R   + TGS  P AQ SNL
Sbjct: 548 QQQQQSAPRLEPTKTGSNNPFAQFSNL 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,870
Number of Sequences: 5004
Number of extensions: 68070
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)