Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_L03
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0935 - 26094827-26094895,26095151-26095385,26095543-26095619     31   1.5  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           29   6.2  
03_05_0774 - 27615899-27617134                                         28   8.1  

>06_03_0935 - 26094827-26094895,26095151-26095385,26095543-26095619
          Length = 126

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 275 FAFGLRAMEKQIVCNGAQVEEW 340
           + FG+ AM K+ VC+GA  E W
Sbjct: 27  WVFGMAAMRKEAVCSGASRERW 48


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 129 PLVSSFMKECTMKNTGRVSLRPVRRDH 49
           P++S + KE T ++      RP+RR+H
Sbjct: 140 PMLSRYFKEKTQQSCEETHFRPIRREH 166


>03_05_0774 - 27615899-27617134
          Length = 411

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 295 RPKPKGKLFAGTKSPLLMAFSRSAGVFHS*STSFQANRSCGVAASHDATT 146
           +PK KGK+ AGTK P   A + +A       T  +  +S G  AS D  T
Sbjct: 224 KPKEKGKVAAGTKQPTAPAETATAS--SPGGTPEEKRKSKGKKASGDQGT 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,941,665
Number of Sequences: 37544
Number of extensions: 431668
Number of successful extensions: 981
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)