Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K22
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
 Frame = +2

Query: 680 SXXXPPPPXXXXPKXFXPLNXXGXGETPPPGNXKKHTXAFXPPXKTPPXXAPXSVS--PT 853
           S   PPPP         PL   G    PPP      +    P    PP  +  +VS  P 
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP----PPLSSSRAVSNPPA 390

Query: 854 PLPXXXGKPWXPLXXPL 904
           P P   G+   P   PL
Sbjct: 391 PPPAIPGRS-APALPPL 406



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
 Frame = +1

Query: 616 PKXPXKRPQN-PXKGPXXXXXXFPXXPPPPPXXXXXKXPXPQXXRXGXNPPTRELXKTHX 792
           P  P +R +  P  G        P  PPPP        P P   R    PP      +  
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373

Query: 793 XVXPPXENPPPXGXP 837
              PP  +      P
Sbjct: 374 RQPPPLSSSRAVSNP 388


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
 Frame = +2

Query: 731  PLNXXGXGETPPPGNXKKHTXAFXP-PXKTPPXXAPXSVSPTPLPXXXGKP 880
            P +  G    PPP           P P   PP  AP  + P P P     P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
 Frame = +3

Query: 621  KXXXKAPK-PXKRAXXXXGXFPXXAPPPPXPXXXKXSXPSIXKXXXKPPHQGTXKNTXXR 797
            K   KAP  P   A       P  APP P P        S       PP      +    
Sbjct: 1016 KLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPS 1075

Query: 798  XPPPXKPPPXXXPXXFP 848
             P P   PP   P   P
Sbjct: 1076 IPAPSGAPPVPAPSGIP 1092


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 801 PPPXKPPPXXXPXXFPXPLXP 863
           PPP  PPP   P   P P  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,159
Number of Sequences: 5004
Number of extensions: 25672
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)