Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K22
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 727 PXPQXXRXGXNPPTRELXKTHXXVXPPXENP 819
           P PQ        P RE   +   + PP +NP
Sbjct: 797 PVPQVNDSTILSPVREKLSSSQPMQPPQQNP 827


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 12/52 (23%), Positives = 15/52 (28%)
 Frame = +3

Query: 681 PXXAPPPPXPXXXKXSXPSIXKXXXKPPHQGTXKNTXXRXPPPXKPPPXXXP 836
           P  APPPP P         + K       +     +         PPP   P
Sbjct: 339 PKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTP 390


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 806 PXKTPPXXAPXSVSPTPLPXXXGKP 880
           P  TPP   P S  P+P P     P
Sbjct: 433 PILTPPSSNPVSPVPSPDPLDLAIP 457


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
 Frame = +3

Query: 732 PSIXKXXXKP-PHQGTXKNTXXRXPPPXKPPPXXXPXXFPXPLXP 863
           PS      +P PHQ          P P + PP   P   P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,966
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)