Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K21
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.7  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = -3

Query: 342 SFDRLLKPGRVLFPRCQAPLFFDAAEKRAEAYRPSKSKYFAL------EVLPFVLMRHLC 181
           S D+ ++   VL    QAP  +D      EAY+P K K+ AL      E  P V+++H  
Sbjct: 610 SEDKEVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHK-KFRALRQKDSAEAEPAVIVQHTQ 668

Query: 180 SK 175
           S+
Sbjct: 669 SQ 670


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 ANIFLNKIMSALKGNLLGSLFEHKCRISTNGKTS 217
           AN  L K+   L+GN+   LF+  C +    K S
Sbjct: 55  ANCELQKLRLLLQGNINNQLFQTPCELLNFPKRS 88


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 668  QEKPXPPXPP*TGE 627
            Q+ P PP PP +G+
Sbjct: 1353 QQPPPPPPPPSSGQ 1366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,205
Number of Sequences: 438
Number of extensions: 3135
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)