Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K20
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    28   1.9  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   3.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   5.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   7.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   7.7  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 565  EVFSYVHEINPKFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFE 705
            + + ++H IN  F+L  LLS SL +   SQ  KLL  +++  +++ E
Sbjct: 878  KTYGHLHYIN--FVLEKLLSSSLLTYNSSQRDKLLYEVSLLFKDLQE 922


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 514 LEFHSQLPMRHFLQLALWLSYC 449
           LEF+S L  RHF+ L L   +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +1

Query: 352 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 516
           +IE Y+N       TE +   A V   ++AS  T    +      + R D L +D     
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581

Query: 517 FTAVFPSISDL-QLSNAEVFSYVHEINPKF 603
              V+ +++D+ QL+++ + SYVH  NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
 Frame = +1

Query: 397 AAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVF-PSISDLQLSNAEVF 573
           A E + L+++   T F  +RK  + I   + + ++   L    +   ++ ++  +  + F
Sbjct: 76  AREEKDLQVSRRDTCFYCSRKIIKCICNEEHVGIESVQLKLILLLCQNLPNVTTNAKKYF 135

Query: 574 SYVHEINPKFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFEAQGTILMTSY 735
           S + +    F L  L  FSLD++T SQL     + A +L E+ +    +L  ++
Sbjct: 136 SSLAD-GHNFTL-TLYKFSLDNQTFSQLLSRFKSFA-TLTELLQVHNVMLQVNF 186


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 556 SNAEVFSYVHEINPKFILGPLLSFSLDS 639
           +N  + S V  +NP  ++ PLL  SLD+
Sbjct: 44  TNRIMLSVVSSLNPDSLIAPLLCVSLDN 71


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 322 HHDILRLNYYSVYLLCSNLKVVDLVQVPLLIDIENFLRNIHECSSSRSSDQGLL 161
           H D   +   S+ L    L  V  +Q+P L  +     N+H   SS+S+D   L
Sbjct: 136 HPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLH---SSKSTDHAYL 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,706
Number of Sequences: 5004
Number of extensions: 64089
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)