Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K19
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   3.6  
12_02_1174 - 26696869-26698191                                         29   6.3  
06_03_0828 + 25137782-25138312,25141349-25141588                       28   8.3  
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    28   8.3  

>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 535 PPPXXXYVPXIXPXIHIXK*XDPXPL*XPXPXVPXPPHXPETXP 666
           PPP   ++P + P         P  L    P  P PP  P+T P
Sbjct: 350 PPPQPSHLPPLPPRPPTMPSMQPDMLAPGVPRFPPPPPPPDTRP 393


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +1

Query: 535 PPPXXXYVPXIXPXIHIXK*XDPXPL*XPXPXVPXPPHXPETXP 666
           PPP     P + P +   K   P  L  P P  P P   P   P
Sbjct: 160 PPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKP 203


>06_03_0828 + 25137782-25138312,25141349-25141588
          Length = 256

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 687 GXXPXGVXXCFRLMGGXGXXGXG 619
           G  P G+  C RL+GG G  G G
Sbjct: 182 GGPPHGINRCCRLVGGGGVGGDG 204


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 601 PXPL*XPXPXVPXPPHXPETXPNP 672
           P P   P P  P PPH P   P P
Sbjct: 41  PPPSPVPSPAPPPPPHRPSPSPPP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,229
Number of Sequences: 37544
Number of extensions: 175717
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)