Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K15
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    30   0.52 
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   6.5  

>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -2

Query: 553 FXLDGFILPSDLYXLGWKT*KSIFLKXXGLPTHFHXIXRLNFFWFKIFNQFLPEEGVKVF 374
           F + GF   S  +   + T  S + K  G+P H      L+FF F  FN F+  E ++ +
Sbjct: 128 FLIAGFTAASKFFSDVFYT-NSRYAKVGGIPLHELNHLELSFFVFNDFNLFISLEDLQAY 186

Query: 373 YXFIL 359
              +L
Sbjct: 187 GDLLL 191


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 252 QSLIXSLNKRPTHLQVSMTSSFPILHLYEXHESKAIXQ 139
           +S++ S NKRPT  Q+  ++ F  L + E H  +A+ +
Sbjct: 642 RSMLSSSNKRPTAAQLLTSNLFHDLVVNELHVYQALLE 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,883
Number of Sequences: 5004
Number of extensions: 46060
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)