Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K14
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 628 PPXPPXXPPPXPPPPPXXPXXXXPXAXXFSP 720
           PP P   PPP    PP  P    P     SP
Sbjct: 39  PPNPSQGPPPG--GPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
 Frame = +1

Query: 616 PXPXPPXPPXXPPPXPP--PPPXXPXXXXP 699
           P   P  P    PP P   PPP  P    P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 601 QXXXXPXPXPPXPPXXPPPXPP 666
           Q    P P    PP  PP  PP
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 636 PPXXXPPXPPPPPXXP 683
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 637 PPXXPPPXPPPPPXXP 684
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 652 PPXPPPPPXXPXXXXP 699
           PP P PPP  P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 649  PPPXPPPP 672
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 652  PPXPPPPP 675
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 639  PXXXPPXPPPPP 674
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,276
Number of Sequences: 438
Number of extensions: 6397
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)