Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K13
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.023
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.22 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.29 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.3 bits (65), Expect = 0.023
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 499 PPPPXXXKXQTPXXAXPPPPXXXPPPPXPP 588
           P P      Q P    PP P   PPP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 669 PPXPXPPPPPXXXKXP 716
           PP P PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 547 PPPPXXXPPPP 579
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect(2) = 0.64
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 553 PPXXXPPPPXP 585
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.4 bits (43), Expect(2) = 0.64
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 679 PXPPPPPXXKXPP 717
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 677  PPPPPPPP 700
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 677  PPPPPPPP 700
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 125 FFYLPKXGNYNLRXF 81
           F++ P+ GNYN+  F
Sbjct: 217 FYFDPRYGNYNINGF 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,430
Number of Sequences: 438
Number of extensions: 6691
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)