Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_K12
(1063 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 37 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.007
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.029
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.039
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.21
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.21
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.36
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.36
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.48
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.63
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.84
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 5.9
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
APP P P P+ PP P PP S +PP P P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = +1
Query: 523 PPPPXPXXPRLPXXPPPXXXP-TXRXPPXSAXPSPPXPXXTNPHTXXXXXXXXSXXPGXX 699
PP P P +P P P + PP + PP + S P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 700 XXPPPPP 720
PPPP
Sbjct: 199 PKVPPPP 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.007
Identities = 30/119 (25%), Positives = 35/119 (29%), Gaps = 8/119 (6%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPR-----LPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNPHT 654
PP AP PPP P P PP P P ++ PP P ++ +
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVS 300
Query: 655 XXXXXXXXSXXPGXXXXPPPPPXXXXXXXXXXXXXXXXXXXLXPPPP---XLAGXXPXP 822
P PPPPP PPPP AG P P
Sbjct: 301 AAALAANKKRPP-----PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354
Score = 33.5 bits (73), Expect = 0.051
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXPPPXXXPTXRXP-PXSAXPSPPXPXXTNPHTXXXX 666
PP + PP P P P LP PP P+ P A +PP P + P
Sbjct: 404 PPLGNASRTSTPPVPTP--PSLPPSAPPSLPPSAPPSLPMGAPAAPPLP-PSAPIAPPLP 460
Query: 667 XXXXSXXPGXXXXPPPPP 720
+ P P PPP
Sbjct: 461 AGMPAAPPLPPAAPAPPP 478
Score = 31.1 bits (67), Expect = 0.27
Identities = 24/100 (24%), Positives = 27/100 (27%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNPHTXXXXXXXXSXXPGX 696
APPPPP P PPP + R P P P + P + P
Sbjct: 360 APPPPPPRSAPSTGRQPPP--LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
Query: 697 XXXPPPPPXXXXXXXXXXXXXXXXXXXLXPPPPXLAGXXP 816
P PP PP P A P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Score = 29.5 bits (63), Expect = 0.84
Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 3/79 (3%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXPPPXXXP---TXRXPPXSAXPSPPXPXXTNPHTXX 660
PP G PP LP PPP + PP PP P + P T
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 661 XXXXXXSXXPGXXXXPPPP 717
S PPP
Sbjct: 375 QPPPLSSSRAVSNPPAPPP 393
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Frame = +1
Query: 514 GAPPPPPXPX-XPRLPXXP-----PPXXXPTXRXPPXSAXPSPPXP 633
GAP PP P P P P P P PP + P+P P
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 7.8
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 15/58 (25%)
Frame = +1
Query: 520 PPPPPX-------PXXPR---LPXXPPPXXXP-TXRXPP----XSAXPSPPXPXXTNP 648
PPPPP P P+ P PPP P T R PP A +PP P P
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.029
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNPHT 654
P G PPP P P PP PT + PP A PS P + P +
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA-PSSEAPSVSTPRS 1254
Score = 30.7 bits (66), Expect = 0.36
Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Frame = +1
Query: 493 PXXXGXXGAPPPPPXPXXPRLPXXPPPXXXPTXRXPP---XSAXPSPPXPXXTNPHTXXX 663
P G P P P P+ PP P+ PP S P P P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Query: 664 XXXXXSXXPGXXXXPPPPP 720
P P P P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAP 1155
Score = 30.7 bits (66), Expect = 0.36
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXP---PPXXXPTXRXP-PXSAXPSPPXPXXT 642
PP G PP PP P +P PP P+ P P + PP P T
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT 1233
Score = 30.3 bits (65), Expect = 0.48
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Frame = +1
Query: 514 GAPP-PPPXPXXPRLPXXP--PPXXXPTXRXPPX----SAXPSPPXPXXTNPHTXXXXXX 672
GAPP P P P +P PP P+ PP S P P P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197
Query: 673 XXSXXPGXXXXPPPPP 720
P P PPP
Sbjct: 1198 PPVPKPSVGVPPVPPP 1213
Score = 29.9 bits (64), Expect = 0.63
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +1
Query: 490 PPXXXGXXGAP--PPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
PP GAP PPP +P P P P P S P P P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP--VPAPSGIPPVPKPSVAAP 1102
Score = 29.5 bits (63), Expect = 0.84
Identities = 23/82 (28%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Frame = +1
Query: 493 PXXXGXXGAPP-PPPXPXXPRLPXXP--PPXXXPTXRXPP---XSAXPSPPXPXXTNPHT 654
P GAPP P P P +P PP P+ PP S P P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 655 XXXXXXXXSXXPGXXXXPPPPP 720
PP PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPP 1193
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPTXRXPP---XSAXPSPPXPXXTNP 648
A P P P+L PP P+ PP S P P P T P
Sbjct: 1005 AAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Score = 26.6 bits (56), Expect = 5.9
Identities = 23/85 (27%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXX--PRLPXX------PPPXXXPTXRXPPXSAXPSPPXPXXTN 645
P G APPP P P P +P P P P P +A P P P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA-PPVPKPSVAV 1111
Query: 646 PHTXXXXXXXXSXXPGXXXXPPPPP 720
P P P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVP 1136
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.039
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = +1
Query: 490 PPXXXGXXGAPPP---PPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXP 633
PP PPP PP P P +P PP P P S+ PS P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL---PASSAPSVPNP 1746
Score = 32.7 bits (71), Expect = 0.090
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
AP PPP P + PPP P PP + P PP P + P
Sbjct: 1704 APTPPPPP----MSVPPPPSAPPMPAGPPSA--PPPPLPASSAP 1741
Score = 29.9 bits (64), Expect = 0.63
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 520 PPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
PP P P P P P PP SA P P P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/64 (26%), Positives = 21/64 (32%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNPHTXXXXXXXXSXXPGX 696
APP P P +P P P P+ P S+ P T P + S P
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536
Query: 697 XXXP 708
P
Sbjct: 1537 PQHP 1540
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 31.5 bits (68), Expect = 0.21
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Frame = +1
Query: 520 PPPPPXPXX----PRLPXXPPPXXXPTXRXPPXSAXPSPP--XPXXTNPHTXXXXXXXXS 681
PPPPP P + PPP T P S PP P NP+T +
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYTPVAPQSPVA 967
Query: 682 XXPGXXXXPPPPP 720
P PP
Sbjct: 968 AASRISSSPNMPP 980
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 31.5 bits (68), Expect = 0.21
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +1
Query: 490 PPXXXGXXGAP-PP-PPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXP 633
PP G P PP P P P L PP P PP P P P
Sbjct: 494 PPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYP 543
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 514 GAPPPPPXPXXPRLPXXPPPXXXP 585
G PPPPP P P PPP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 505 GXXGAPPPPPXPXXPRLPXXPPP 573
G PPPPP P P PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 556 PXXPPPXXXPTXRXPPXSAXPSPPXP 633
P PPP P PP S P PP P
Sbjct: 6 PGNPPPPPPPPGFEPP-SQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.36
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXPPPXXXP 585
PP G PPPPP P PPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXPPPXXXPTXRXPP 603
PP G GA PPPP P P + P + P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 490 PPXXXGXXGAPPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
PP P P P P P P P P PP A PP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 520 PPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXP 633
PPPPP P P P P P P PP P
Sbjct: 733 PPPPPAVIVPT----PAPAPIPVPPPAPIMGGPPPPPP 766
Score = 24.2 bits (50), Expect(2) = 2.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 768 PXPPPPPPXXXRXXXSR 818
P PPPPPP SR
Sbjct: 775 PPPPPPPPPAVSAGGSR 791
Score = 23.8 bits (49), Expect(2) = 1.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 784 PPPPXLAGXXPXP 822
PPPP +AG P P
Sbjct: 765 PPPPGVAGAGPPP 777
Score = 23.0 bits (47), Expect(2) = 1.5
Identities = 11/35 (31%), Positives = 11/35 (31%)
Frame = +1
Query: 616 PSPPXPXXTNPHTXXXXXXXXSXXPGXXXXPPPPP 720
P PP P P P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 21.8 bits (44), Expect(2) = 2.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 759 PXXPXPPPPPP 791
P PPPPPP
Sbjct: 756 PIMGGPPPPPP 766
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.48
Identities = 26/78 (33%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = -3
Query: 716 GGGGXXXXPGXXEXXXXXXXGVWGFVXXGXGGEGXAXXGGXRXVGXXXGGGXXGXRGXXG 537
GGG PG G G G GG G GG GGG G G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPGGFGGGPGGFGGGLG 252
Query: 536 --XGGGGGAPXXPXXXGG 489
GG GG P GG
Sbjct: 253 GFGGGPGGFGGGPGGHGG 270
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.9 bits (64), Expect = 0.63
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
A PPPP P LP PP PT PP + P+ NP
Sbjct: 1880 AAPPPPPPMA--LPKAGPPSAAPTSALPP-AGPPAGATAISGNP 1920
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 520 PPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPP 627
P PP P P +P P P P P + P PP
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPV--VPEAPSVPQPP 608
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 632 GXGG--EGXAXXGGXRXVGXXXGGGXXGXRGXXGXGGGGGA 516
G GG G GG R G GGG G RG G GG GGA
Sbjct: 17 GRGGFNGGRGGFGGGR--GGARGGGRGGARG--GRGGRGGA 53
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 626 GGEGXAXXGGXRXVGXXXGGGXXGXRGXXG--XGGGGGA 516
GG G A GG R GG G RG G GG GGA
Sbjct: 30 GGRGGA-RGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 523 PPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPPXPXXTNP 648
P P P P LP P P P PP P P P P
Sbjct: 99 PEEPLPREPPLPNEPVP-EEPLPGEPPLPDEPVPEEPLPGEP 139
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Frame = +1
Query: 517 APPPPPXPXXPRLPXXPPPXXXPT---------XRXPPXSAXPSPPXPXXTNPHT 654
APPPPP P P P+ PP A PS P TN T
Sbjct: 237 APPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNAST 291
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +1
Query: 520 PPPPPXPXXPRLPXXPPPXXXPTXRXPPXSAXPSPP 627
P PPP RLP P P T PP S P+PP
Sbjct: 49 PLPPPTR---RLPRKPLPFRS-TSLQPPSSQPPAPP 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,952
Number of Sequences: 5004
Number of extensions: 16427
Number of successful extensions: 310
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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