Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K11
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   1.6  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   2.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   4.8  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    27   4.8  

>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 355 KFPNTTHQNLMCPKTQKLVIAALKNXNFSKRAQLRYILNVN 477
           + P T    L   +TQ L     KN +F K ++L Y LN++
Sbjct: 70  ELPKTEQAILKSERTQYLEYFRKKNPSFEKVSELLYFLNIS 110


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 255  GDMPLEEINPDLAEAFNALP-AGRSAGKDVEAAPEIPEHYSSKLNVPEN 398
            G   + E+   +   F  L  AG  AG  +E  PEIP+H     N   N
Sbjct: 1379 GSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWNTTWN 1427


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 429 IFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQR 325
           + +SG+ Q LG       M S REF  + +HLY +
Sbjct: 117 LLESGFSQPLGLNNR--FMPSTREFAAIFKHLYNK 149


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +1

Query: 535 FCLLT--PXXIVGITXPL*LYRK*XFTIFHFLXTPXFXI--WXYL*SXXL-LCXXLXNGX 699
           F LL+  P  IVG+T P+ ++    + I H   TP F    W  L S        + NG 
Sbjct: 85  FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFIIAIANGV 144

Query: 700 Y 702
           Y
Sbjct: 145 Y 145


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +3

Query: 216 PQAPGYVPVYIRSGDMPLEEINP----DLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL 383
           PQ    +  Y+ +GD+PL++       D+ EA +  P   +    V  A  IP+ + S L
Sbjct: 156 PQLDSMIQEYLSNGDLPLQQSTEDYVYDIYEASSKEPNKPTFAYGVIDALSIPDAFRSSL 215

Query: 384 NVPENPEIGDS 416
                 E  DS
Sbjct: 216 EQELVSETVDS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,356
Number of Sequences: 5004
Number of extensions: 45041
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)