Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_K08
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 30 0.37
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 27 2.6
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 27 3.4
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 27 3.4
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 4.5
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 7.9
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 26 7.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 7.9
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 7.9
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 271 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 405
++DYA K L + DDDL+++S M DI+ AFN I
Sbjct: 54 LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 463 EFIKRS*EC-MERTNNKTFCCTIRQLSQECDQTRVCYAE*RNGTNH-LHQH 609
E K +C +R + T CC IR ++ +CD N T H +H+H
Sbjct: 28 ELNKNPKDCNSKRKRSVTECCEIRLITSKCDFESTQQLVHHNCTGHKVHEH 78
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 81 NAYDLAQSRRTSQILRIPYSEIG 13
+AY SRRTS +LR Y ++G
Sbjct: 184 DAYSSGSSRRTSNVLRQAYKKLG 206
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -3
Query: 477 TFNKFDCASSFLDIGVVLPL*IHLNVVEGIIYICIKHFLANSEEVIVGRRILCLAQQIFV 298
TFN + LDI ++ +H+ + + Y+ + FL +S+ I+ + LA+
Sbjct: 355 TFNNLEFLHYCLDISEMISSYLHVEDEKNVFYLALCEFLNSSDYSILIATLRTLARLALN 414
Query: 297 ALLLRIVNDATDN 259
R++ D N
Sbjct: 415 DRNNRLLQDLKSN 427
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 336 GRRILCLAQQIFVALLLRI-VNDATDNCAYLLESVLSCVPLLTSHMIANQVGKDVVEDLA 160
G+ ++ + FV + D + AYLL+S+ C P +T H + D+ E A
Sbjct: 795 GKHLVMAKTEPFVITATSMNTTDVDEVSAYLLKSIKFCDPNITPH-DGDASLCDISEGSA 853
Query: 159 RSLGYVISVTY 127
R L +I ++
Sbjct: 854 RKLTSIIKYSF 864
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 267 TDNCAYLLESVLSCVPLLTSHMIANQVGKDVVEDLARSL 151
T+ C+ ++ CV L H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 127 PPRKTTKINVIFIFD*CV*SSAVPAH*SNL 38
P RK ++ ++F+F + +S VPAH S +
Sbjct: 149 PSRKVGQLQILFLFKDHMNTSIVPAHDSEI 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 527 FDNYHKNVIRPEFVTPNXXXXXXXYINTILGY--GTHQEPHYF 649
F+N +++ R + +PN YI++ + Y HQ+ Y+
Sbjct: 234 FNNETESIFRKKIRSPNTINQKHPYISSTISYQPNVHQDAKYY 276
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 319 AQDSTTDDDLLRVSEEMFNADI 384
AQD DDD+ + EE+F+ D+
Sbjct: 33 AQDDEPDDDIDALIEELFSEDV 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,176
Number of Sequences: 5004
Number of extensions: 56001
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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