Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K06
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.7  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   3.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   4.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   7.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   8.6  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 702 PLXPXPPXXPPTPPPXPPXXPLP 770
           PL P  P  PP P   P   PLP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLP 470



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 702 PLXPXPPXXPPTPPPXPPXXPLP 770
           P+ P  P   P  PP PP  P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAP 476



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 702 PLXPXPPXXPPT-PPPXPPXXP 764
           P  P PP  PP+ PP  PP  P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAP 436



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +3

Query: 702 PLXPXPPXXPPTPP--PXPPXXPLP 770
           PL    P  PP PP  P PP  P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 23.8 bits (49), Expect(2) = 6.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 711 PXPPXXPPTPPPXPP 755
           P PP     PPP PP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 20.6 bits (41), Expect(2) = 6.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 729 PPTPPPXPPXXPLP 770
           PP PPP  P    P
Sbjct: 388 PPAPPPAIPGRSAP 401


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +3

Query: 702 PLXPXPPXXPPT--PPPXPPXXPLPRKHXRP 788
           P  P P   PP+  PPP PP     RK+  P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 717 PPXXPPTPPPXPPXXP 764
           PP  PP PPP P   P
Sbjct: 5   PPGNPPPPPPPPGFEP 20



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +3

Query: 702 PLXPXPPXXPP--TPPPXPPXXPLP 770
           P  P PP  PP   PP  PP  P P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 394  CSXCSIMPKILXVSTKXHATPEST*TXXCSYTPTTXLLSSASDPAQLRSTW 546
            CS  S+ P  +  +TK   T   T T   + TPTT   +S +  AQ  S W
Sbjct: 922  CSDGSLSPNTV-TTTKATTTFTPTPTTTTTPTPTTTSATSTNVIAQCGSAW 971


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 702  PLXPXPPXXPPTPPPXPPXXPLPRKHXRPXL 794
            P  P PP   P PP  PP    P     P L
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 338 GKESDLVHHHEIXVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 162
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 161 RS 156
           RS
Sbjct: 334 RS 335


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 7.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 702 PLXPXPPXXPPTPPPXPPXXPLP 770
           P  P P    PTP P P   P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 20.6 bits (41), Expect(2) = 7.4
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +3

Query: 867 PXXPTXXXPXXPPPP 911
           P  P    P  PPPP
Sbjct: 753 PPAPIMGGPPPPPPP 767


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 102 LPSLSASTVPEFKTTPVDAAFVEKQKKILSLFYNVNEISYEAEYYKVAQDFN 257
           LPS ++S+VP+ +T+ + +       +I SL  N  E+S      ++ Q +N
Sbjct: 86  LPSATSSSVPQSRTSELSSTNSIPTPRITSL--NPEELSRRERAQRLLQTYN 135


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 169 STNAASTGVVLNSGTVLAESEGNKPR*NQDSLHGLSRRSELSNLKE 32
           STNA S     + GTV A   G +P     S    S  + LSNL +
Sbjct: 72  STNAQSNIATPSPGTVAAAISGIQPPPKTPSSDSPSLENSLSNLND 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,378
Number of Sequences: 5004
Number of extensions: 44076
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)