Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K05
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    33   0.27 
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.47 

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 126 LCWLWPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 305
           LC+LW  L  T T   TT  T+   P  TT      N +TT     T+P  + T+++PL+
Sbjct: 179 LCYLWVPL--TTTTTTTTTTTTTTSPMNTTTTTVLINGTTTT----TVPTNETTTTVPLN 232


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 138 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 296
           WP   ET     TT  T+  +P  TT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 138 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 296
           WP   ET     TT  T+  +P  TT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,052,387
Number of Sequences: 27780
Number of extensions: 370836
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)