Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP16_F_K02
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 127 2e-30
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 123 4e-29
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.041
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 0.15
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.38
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 29 1.2
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 2.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 6.2
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.2
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 6.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 8.2
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 127 bits (307), Expect = 2e-30
Identities = 52/88 (59%), Positives = 71/88 (80%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 265
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 266 KIHKRSKIKPFVKVVNYNHLMPTRYTVD 349
+I KRS++KPF+KV+NYNHLMPTRY ++
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALE 88
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 435 EERYKSGKNKWFFQKLRF 488
EE+Y++GK+ WFF LRF
Sbjct: 119 EEKYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 123 bits (296), Expect = 4e-29
Identities = 50/88 (56%), Positives = 70/88 (79%)
Frame = +2
Query: 86 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 265
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 266 KIHKRSKIKPFVKVVNYNHLMPTRYTVD 349
+I +RS++KPF+KVVNYNHLMPTRY ++
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALE 88
Score = 32.7 bits (71), Expect = 0.071
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 435 EERYKSGKNKWFFQKLRF 488
EE+Y+SGK+ WFF LRF
Sbjct: 119 EEKYQSGKSAWFFTPLRF 136
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect(2) = 0.041
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 541 PXPPPPPPPXXXP 579
P PPPPPPP P
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +1
Query: 541 PXP-PPPPPPXXXPXQS 588
P P PPPPPP P QS
Sbjct: 234 PLPAPPPPPPPTLPPQS 250
Score = 26.2 bits (55), Expect(2) = 0.12
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 541 PXPPPPPPP 567
P PPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 24.2 bits (50), Expect(2) = 0.041
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 532 PXXPXPPPPPPP 567
P PPPPPPP
Sbjct: 184 PSDYNPPPPPPP 195
Score = 24.2 bits (50), Expect(2) = 0.12
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 547 PPPPPPPXXXPXQS 588
PPPPPPP Q+
Sbjct: 190 PPPPPPPPAVEDQA 203
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect(2) = 0.15
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 532 PXXPXPPPPPPP 567
P P PPPPPPP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 21.8 bits (44), Expect(2) = 0.15
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 553 PPPPPXXXPXQSPXG 597
PPPPP P S G
Sbjct: 945 PPPPPPPPPLVSAAG 959
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.17
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 77 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 178
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 532 PXXPXPPPPPPPXXXPXQSP 591
P P PPPPPP P Q P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPP 25
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 532 PXXPXPPPPPPPXXXPXQSP 591
P PPPPPPP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQP 24
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 121 QHYFTRLHYFAHLGGIFPLLVDIESKIL 38
Q YFT ++ F G +FP +VD + IL
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVDPFTTIL 830
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 92 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 175
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 547 PPPPPPPXXXPXQSPXGR 600
PPPPPPP SP R
Sbjct: 370 PPPPPPPPELLNHSPKSR 387
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 547 PPPPPPPXXXPXQSPXGRGXS 609
PPPPPP + P G G S
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSS 332
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 192 LSEVPSS*FLTTIALRPAYRPLRTSTTLPGFIILPILEGYSLY 64
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 541 PXPPPPPPP 567
P PPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 257 GKNKIHKRSKIKPFVKVVNYNH 322
G + I R K P K+VNYNH
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNH 49
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 541 PXPPPPPPP 567
P PPPPPPP
Sbjct: 775 PPPPPPPPP 783
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 162 SRITTKVPPTSHTGMPSSLVSTGT 233
SR+ T +PP S + +P+ +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,682
Number of Sequences: 5004
Number of extensions: 50812
Number of successful extensions: 322
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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