Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K02
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.30 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   6.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 532 PXXPXPPPPPPPXXXP 579
           P  P PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 524 SNDPXXPXPPPPP 562
           S+ P  P PPPPP
Sbjct: 335 SDTPPKPAPPPPP 347


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 168 ITTKVPPTSHTGMPSSLVSTGTP 236
           IT + PP  HT      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 547  PPPPPPP 567
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 547  PPPPPPP 567
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 541  PXPPPPPP 564
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 541  PXPPPPPP 564
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 518 YVSNDPXXPXPPPPP 562
           +V+ D   P PPPPP
Sbjct: 366 FVTFDLDEPLPPPPP 380


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 547 PPPPPPPXXXPXQSP 591
           PPP  PP   P Q+P
Sbjct: 46  PPPGGPPGAPPSQNP 60


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 143 PRTGHLGPALLYP 105
           PR  H+GP+ L+P
Sbjct: 139 PRFRHIGPSTLFP 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,756
Number of Sequences: 438
Number of extensions: 5952
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)