Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_K01
         (966 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.34 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
 Frame = +1

Query: 730 PXPPXPXXPXLPL--PPPXXPPXPPPXXXPPXMXXS 831
           P  P    P  P   PPP  PP  PP   P  M  S
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMIS 66



 Score = 25.8 bits (54), Expect = 0.59
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 762 APPPPXQXPXPP-PPXAPP 815
           +PP P Q P P  PP APP
Sbjct: 38  SPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +3

Query: 417 RPPXTRPXNXPXXGXXLGAPXXXXPAIPPXXPPPXPPP 530
           +P    P   P       AP    P  P   PPP  PP
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 12/47 (25%), Positives = 16/47 (34%)
 Frame = +1

Query: 736 PPXPXXPXLPLPPPXXPPXPPPXXXPPXMXXSLTLPPSXXRPXXRXV 876
           PP    P  P+P        PP    P    ++   PS   P  R +
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGPIRRRI 456



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 660 PTPXPTPRXPXPXPPXAAXXTPPPLXP 740
           P+P  +P+ P    P      PPP  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 451 PXXRPWAPQXXXXPPSPLPXPPXXPXP 531
           P   P APQ    PP+P   PP    P
Sbjct: 27  PHQSPQAPQ-RGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +3

Query: 609 PPLAXXPXPPXSRXXXXPTPXPTPRXPXPXP 701
           PP A  P PP           P P  P   P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 13/53 (24%), Positives = 14/53 (26%)
 Frame = +3

Query: 606 PPPLAXXPXPPXSRXXXXPTPXPTPRXPXPXPPXAAXXTPPPLXPXXXXXXPA 764
           P   A  P P   +    P     P      PP      PP   P      PA
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/38 (26%), Positives = 13/38 (34%)
 Frame = +1

Query: 736 PPXPXXPXLPLPPPXXPPXPPPXXXPPXMXXSLTLPPS 849
           P  P     P P    PP  PP   P      + + P+
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPA 68


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 510  PPPXPPPP 533
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 769 PPPXXPPXPPPXXXPP 816
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 498 PPXXPPPXPPP 530
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 501 PXXPPPXPPPP 533
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,088
Number of Sequences: 438
Number of extensions: 9229
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)