Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J22
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    42   1e-04
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    27   5.1  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    26   8.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +1

Query: 127 EEVAXLXVDNGXGMCKVGFVXDDAXR 204
           EE+A L +DNG GMCK GF  DDA R
Sbjct: 3   EEIAALVIDNGSGMCKAGFAGDDAPR 28


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 130 EVAXLXVDNGXGMCKVGFVXDDAXR 204
           E A + +DNG G  KVG+  D+  R
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPR 26


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 142 LXVDNGXGMCKVGFVXDD 195
           + +DNG G  K GF  DD
Sbjct: 12  ICIDNGSGFIKAGFAGDD 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,724
Number of Sequences: 5004
Number of extensions: 10949
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)