Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J21
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0673 - 5491694-5493102,5493386-5493995                           29   4.9  
04_01_0064 - 634636-634950                                             28   8.6  
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    28   8.6  

>11_01_0673 - 5491694-5493102,5493386-5493995
          Length = 672

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 39  DFELCTQEFFKHEGSSTTGLLGRGVSLSD*WWL---RDDGLHQGNQMVNLGHEDEGALHH 209
           D    T+ F +  GS   G + +GV LSD   +   R DGLHQG +         G +HH
Sbjct: 440 DLSHATKNFSEKLGSGGFGSVFKGV-LSDSTTIAVKRLDGLHQGEKQFRAEVSSLGLIHH 498


>04_01_0064 - 634636-634950
          Length = 104

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 324 LTTXTFMYXSQLFSMLYSLGDLLDVLKHGRLEDMV 220
           LTT    +  +L S  Y + D+LDV  + RLE+ V
Sbjct: 69  LTTDMEQWACRLRSAFYDVEDILDVADYNRLENKV 103


>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 312 TFMYXSQLFSMLYSLGDLLDVLKHGRLEDMVKQLHDAKLL-HLHVQGLPFGSLGED 148
           T++    L  + + + + L+VL      D+V  +   KLL  LH++GL  G+L ED
Sbjct: 724 TYLRLQVLREIFWDVDEKLEVLMKLTFSDLVAYV--PKLLSQLHIEGLCHGNLSED 777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,251,557
Number of Sequences: 37544
Number of extensions: 373128
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)