Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J20
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...   120   2e-27
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...   120   2e-27
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...   118   6e-27
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215...    29   4.8  
09_02_0603 - 11150739-11150746,11150791-11151340                       28   8.3  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score =  120 bits (288), Expect = 2e-27
 Identities = 51/97 (52%), Positives = 67/97 (69%)
 Frame = +3

Query: 60  IVKSDKMTKGXSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 239
           ++ S  + KG  SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA 
Sbjct: 16  LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75

Query: 240 XXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 350
                    MR+++ V RRF++ F+EG    P+K  A
Sbjct: 76  RRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score =  120 bits (288), Expect = 2e-27
 Identities = 51/93 (54%), Positives = 66/93 (70%)
 Frame = +3

Query: 78  MTKGXSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 257
           M KG  SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 258 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 356
              MR+++ V RRF++ F+EG    P+K  A++
Sbjct: 61  TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score =  118 bits (284), Expect = 6e-27
 Identities = 51/93 (54%), Positives = 66/93 (70%)
 Frame = +3

Query: 78  MTKGXSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 257
           M KG  SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA       
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60

Query: 258 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 356
              MR+L+ V +RF++ F+EG    P+K  A++
Sbjct: 61  TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>04_04_1658 - 35119623-35119754,35121033-35121121,35121205-35121599,
            35122009-35122091,35122163-35124184,35124859-35124927,
            35125050-35125130,35125215-35125308,35125435-35125499,
            35125961-35126038,35126115-35126360
          Length = 1117

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 730  SPDSLXPGPFRLRXXGISPPPKAGNT----GYPTQSRGYPP 840
            SP  + PG  R +  G  PPP A N     G+P   R  PP
Sbjct: 985  SPSDMAPGKQRGKAKGAPPPPAAPNAAAAGGFPACLRLMPP 1025


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +1

Query: 733 PDSLXPGPFRLRXX-GISPPPKAGNTGYPTQSRGYPP 840
           P  L  G F L    G  PPP  G+T  P    G PP
Sbjct: 27  PPRLEKGNFALPPPFGFPPPPPPGSTFVPLPQSGVPP 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,967,425
Number of Sequences: 37544
Number of extensions: 384858
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)