Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J19
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    27   4.4  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 694 PPPPXKXXXXXXPPXXXXXXXXPPPXXXPPP 786
           PP P        PP        PPP   PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 633 PXXGGXXPPPXXXXXXXXXXPPPP 704
           P  GG  PPP          PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 347 IYGSRFKDHFPIALAEPKDLDRRTRFDDAVTDVPAHFFNF 228
           IY  RF +  P +   P  +      +DAVTDVP +   F
Sbjct: 278 IYKVRFPESPPRSFRPPYGIQYYFYLEDAVTDVPEYVVPF 317


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 329 KDHFPIALAEPKDLDRRTRFDDAVTDVPAHFFNFLEDLPP 210
           K+  PIA+ + K + R    + AV +V    FN  ED  P
Sbjct: 259 KNGMPIAIEKAKAVSRVGNEEGAVGEVLERIFNIPEDYTP 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,388
Number of Sequences: 5004
Number of extensions: 38106
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)