Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J12
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.38 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.88 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +2

Query: 722 PLXXPLPAXPTLXAFKXXPXSPXPXXPXXAAPXPPXPXXP 841
           P   P+P  P        P  P P     A P PP P  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 27/93 (29%), Positives = 34/93 (36%)
 Frame = +1

Query: 478  ISSLKGGXTVXHTITG*RXTDHVSKRPXXRPXTXKPXXVAAXXP*GPXPPAXHPXXXPLK 657
            I S K    +   + G     H    P  RP +  P  ++A  P  P PP   P   P  
Sbjct: 1664 IRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTP--PPPPMSVP---PPP 1718

Query: 658  SXGGXNPXGL*XIPGPXPPXXXPXXASPXXPNP 756
            S     P G    P   PP   P  ++P  PNP
Sbjct: 1719 S-APPMPAG----PPSAPPPPLPASSAPSVPNP 1746


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
 Frame = +2

Query: 617  PAPXPXIPXXPRSSXRVAETPXXXKXSQXLXPXQXPLXXPLPAXPTLXAFKXX-PXSPXP 793
            P P P +   P      A  P   K S    P   P   P    P++ A     P S  P
Sbjct: 1122 PVPKPSVAAPPVPVPSGA--PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179

Query: 794  XXPXXAAPXPPXP 832
              P  AA  PP P
Sbjct: 1180 PVPKPAAGVPPVP 1192



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
 Frame = +2

Query: 617  PAPXPXI--PXXPRSSXRV------AETPXXXKXSQXLXPXQXPLXXPLPAXPTLXAFKX 772
            P P P +  P  P+ S  V      +  P   K S    P   P   P    P++ A   
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152

Query: 773  XPXSPXPXXPXXAAPXPPXPXXPXYGXLP 859
               S  P  P  +   PP P  P  G  P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVP-APSSGIPP 1180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,555
Number of Sequences: 5004
Number of extensions: 20195
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)