Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J11
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    30   2.6  
U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astaci...    29   6.0  
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kina...    28   7.9  
AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    28   7.9  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = -3

Query: 378 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 217
           L LPPT  N   +   C+    L       ++  SSS P +V +   TV  ++TRL G  
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679

Query: 216 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 70
           +    T  KP    L +   S   S  S  L +S ST + W    S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = -3

Query: 378 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 217
           L LPPT  N   +   C+    L       ++  SSS P +V +   TV  ++TRL G  
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679

Query: 216 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 70
           +    T  KP    L +   S   S  S  L +S ST + W    S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 274 RPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVE 95
           RP  G   +LD+ E  GP +V +V+ D  +      D  +G  F  +         CRV+
Sbjct: 97  RPDRGKFTILDNAEVAGPEEVLNVNFDSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQ 156


>U13072-7|AAK31398.2|  382|Caenorhabditis elegans Nematode astacin
           protease protein 7 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 294 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 178
           +S++P+S  +  +TVC WT  R    A Y   + + P  C
Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 420 VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGV 256
           + +P   +P PS ++PLPP  +  P S Y  ++  +    ++S+S   S L K +
Sbjct: 172 IVSPDVRRPPPSLSIPLPP-MHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAI 225


>U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kinase
           protein 1, isoformb protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = -2

Query: 604 PGXSEAMSCRCATNAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADECDSDGP 437
           PG S  +S    T  V  R +  L AA+  R Q       RLVR     E D  GP
Sbjct: 10  PGPSSTVSTMTTTGTVDRRSL--LSAASMVRQQSDTTGVRRLVRARAVQEDDEAGP 63


>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = +1

Query: 34  LKI*LPR---ADVLARAAPRHGPPPL 102
           LKI +PR   A+V ARAAP   PPP+
Sbjct: 74  LKIYIPRGGKANVAARAAPARPPPPM 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,753,431
Number of Sequences: 27780
Number of extensions: 388224
Number of successful extensions: 1360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)