Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J06
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   2.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.8  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 185 PGSSLVRSPGSDPAAYRIPVRLSPFG 262
           P  ++V  PG +P   R+P  LS  G
Sbjct: 361 PMHNVVYRPGENPVTQRLPAVLSRIG 386


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 331 WAVCTNPPFSPTAAP 375
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 127 TLKSEVAKPDRTIKIPGVSPWKLPRALSWFRPCRLPDTCPP 249
           T +  +++  RT  + GV+    P  +SW +  + P   PP
Sbjct: 617 TFQEGLSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPP 657


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 167 RYQAFPPGSSLVRSPGSDPAAYRIPVRL 250
           +YQ  P    +  +   DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 167 RYQAFPPGSSLVRSPGSDPAAYRIPVRL 250
           +YQ  P    +  +   DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,271
Number of Sequences: 438
Number of extensions: 5858
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)