Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_J05
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.17 
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   2.8  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   8.6  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 314 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 484
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 700 TPVAVKRPNRPSIASNNLFFPHQSGTXRNENAVN 801
           T V+++ P +P   SNNL FP  +    N N  N
Sbjct: 202 TSVSIEIPIKPKELSNNLPFPRLNNNNTNNNNDN 235


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 232 FVRRHDSDDSXVEPILSFVLIIPVGETX*KKYNSMF 125
           F  R D   + VEP++ F+ +I VG+   +  +S F
Sbjct: 613 FDPRRDFSSNTVEPVVKFLELINVGDMIQQMMDSFF 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,906
Number of Sequences: 5004
Number of extensions: 60584
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)