Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I24
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.3  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   9.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   9.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.0  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 361 GGGGGGXXXGGGGGXXGWRXGXGXXGXSXXSXRG 260
           GG GGG     GGG  G R G G  G +     G
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -3

Query: 361 GGGGGGXXXGGGGGXXGWRXGXGXXGXSXXSXRG 260
           GG GGG   G GGG  G   G G  G S    RG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRG-GFRGGSRGGFRG 192



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -3

Query: 361 GGGGGGXXXGGGGGXXGWRXGXGXXGXSXXSXRG 260
           GG GG    G GGG  G   G G  G S    RG
Sbjct: 152 GGFGGNSRGGFGGGSRG-GFGGGSRGGSRGGFRG 184


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 322  PPPPPXXXPPPP 357
            PPPPP   PPPP
Sbjct: 1707 PPPPPMSVPPPP 1718



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
 Frame = +3

Query: 513  PXXHPXXPTRP-PXXP--TTXHPPXPPAXPXRAXP 608
            P   P  PT P P  P  +  H P PP  P  A P
Sbjct: 1355 PPVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNAMP 1389



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 262  PVPXXHXSPXXXXRPAXRXXPPPPPXXXPPPPP 360
            PV      P     P      PPPP    PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 262 PVPXXHXSPXXXXRPAXRXXPPPPPXXXPPPPP 360
           P P     P     P      PPPP   PPPPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
 Frame = +1

Query: 262 PVPXXHXSPXXXXRPAXRXXPPPPPXXX------PPPPP 360
           P P     P     P     PPPPP         PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 507 RPPXXHPXXPTRPPXXPTTXHPPXPPAXP 593
           RPP   P  P+ PP  P +  PP P   P
Sbjct: 138 RPPTSAPPRPSIPPPSPASA-PPIPSKAP 165


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 262  PVPXXHXSPXXXXRPAXRXXPPPPPXXXPPPP 357
            PVP          +PA    P PPP   PP P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 262  PVPXXHXSPXXXXRPAXRXXPPPPPXXXPPPP 357
            PVP    +P    +P+    P PPP   PP P
Sbjct: 1190 PVPPPSEAPPVP-KPSVGVPPVPPPSTAPPVP 1220


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +1

Query: 304 PAXRXXPPPPPXXXPP--PPP 360
           P     PPPPP   PP  PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPP 26


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 513 PXXHPXXPTRPPXXPTTXHPPXPP 584
           P   P  PT  P      HPP PP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPP 748


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 592 GXAGGXGGWXVVGXXGGRVGXXGWXXGGR 506
           G  GG GG+   G  GGR G  G    GR
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFGGGRGRGR 476


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 525 PXXPTRPPXXPTTXHPPXPPAXPXRA 602
           P  P+ PP  P +  P  PP+ P  A
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGA 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.140    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 956,599
Number of Sequences: 5004
Number of extensions: 8816
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)