Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I24
         (957 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 262 PVPXXHXSPXXXXRPAXRXXPPPPPXXXPPPPP 360
           P P  H SP    R +       PP   PP  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +1

Query: 268 PXXHXSPXXXXRPAXRXXPPPPPXXXPPPPP 360
           P    SP    +   R  PP P    PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 331 PPXXXPPPPP 360
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 325 PPPPXXXPPPP 357
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 328 PPPXXXPPPPP 360
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 586 AGGXGGWXVVGXXGGR 539
           A G GG  VVG  GGR
Sbjct: 573 AAGVGGVPVVGAGGGR 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.140    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,325
Number of Sequences: 438
Number of extensions: 2527
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)