Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I21
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.078
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.31 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   5.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.9  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 519 PPXPPPPPPPXXXXSPPAA 575
           PP P PPPPP     P +A
Sbjct: 338 PPKPAPPPPPPSSSGPDSA 356



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 501 STXPXXPPXPPPPP 542
           S  P  P  PPPPP
Sbjct: 335 SDTPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 511 PXXXPPPPPPP 543
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 523  PPPPPPPP 546
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.31
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 526  PPPPPPPP 549
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 519  PPXPPPPP 542
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 522  PXPPPPPP 545
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 511  PXXXPPPPPPPPP 549
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 502  VPXPXXXPPPPPPP 543
            +P      PPPPPP
Sbjct: 1851 IPVSGSPEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 584 GXSRGXXGXXXXGGGGGGGGGXXXGXGTGXTXV*YKXMVTV 462
           G   G  G     G   GGGG   G  +G + +    +VTV
Sbjct: 29  GVVTGASGGSIVVGANNGGGGGGLGIASGLSAMLSLVVVTV 69



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -3

Query: 613 GXPR*PLTXGXXPAAGGDXXXXGGGGGGGXGG 518
           G P      G    A G     G   GGG GG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 498 TSTXPXXPPXPPPPPPPXXXXSPPAAGXXPLVRGYLGXPP 617
           +S  P   P P   P      SPP     P   G  G PP
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 510 PXXPPXPPPPPPPXXXXSPPAAG 578
           P  PP  PP   P      PA+G
Sbjct: 48  PGGPPGAPPSQNPSQMMISPASG 70


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 303 WIXDCWGGSRESGCCSYVIHWECLSCQYYCT 395
           W+ D     RE G    +  W+  + +YY T
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETAKYYVT 88


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 303 WIXDCWGGSRESGCCSYVIHWECLSCQYYCT 395
           W+ D     RE G    +  W+  + +YY T
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVT 31


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 480 ILNXXXTSTXPXXPPXPPPPPP 545
           + N   T+     PP   PPPP
Sbjct: 647 VQNATDTTNFDEYPPDSDPPPP 668


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 303 WIXDCWGGSRESGCCSYVIHWECLSCQYYCT 395
           W+ D     RE G    +  W+  + +YY T
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETSKYYVT 88


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 577 PAAGGDXXXXGGGGGGG 527
           PA G      GG GGGG
Sbjct: 588 PAVGVAAASAGGAGGGG 604


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 130 YSRNCHTRPKQHNRYIY 180
           ++ +C  +PK HN  IY
Sbjct: 23  WALDCSIKPKDHNGSIY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,126
Number of Sequences: 438
Number of extensions: 6683
Number of successful extensions: 61
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)