Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP16_F_I20
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.43 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.56 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   2.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
 Frame = +2

Query: 149 PXPPPXGXXKXXAXPSPGXXNFXVKKXGXGXPXFFRXTTPXLR--GXXWAXPXPPXPXPP 322
           P PPP         P P   +  V       P     + P L   G       PP P PP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 323 XXPP-PPPXAP 352
             PP  PP  P
Sbjct: 422 SLPPSAPPSLP 432



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 266 PXLRGXXWAXPXPPX-PXPPXXPPPPPXAP 352
           P   G   A P PP  P PP  P P P AP
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 260  TTPXLRGXXWAXPX---PPXPXPPXXPPPPPXAP 352
            +TP +R    A P    P  P PP   PPPP AP
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 296 PXPPXPXPPXXPPPPP 343
           P PP   PP  PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 2.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 296 PXPPXPXPPXXPP 334
           P PP P PP  PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 21.0 bits (42), Expect(2) = 2.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 311 PXPPXXPPPPPXAP 352
           P PP  P  PP  P
Sbjct: 273 PPPPATPSQPPRPP 286


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
 Frame = +2

Query: 296 PXPPXPXP------PXXPPPPPXA 349
           P PP P P      P  PPPPP A
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
 Frame = +2

Query: 302 PPXPXPPXX----PPPPPXAP 352
           PP P PP      PPPPP  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,985
Number of Sequences: 5004
Number of extensions: 6647
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)